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Archive for July 15th, 2007

Birthday for virus

July 15, 2007

IT has now been a quarter of a century since the world’s first computer virus appeared.

Although generally thought to be a modern phenomenon, the first virus actually predates the arrival of the first IBM-compatible PC.

Elk Cloner, which spread between Apple II computers via infected floppy disks, has the dubious distinction of the first computer virus to spread in the wild.

It is thought to have been created by Rich Skrenta, a 15-year- old high school student from Pittsburgh, who released it in July 1982.

But rather than install trojans, wipe hard drives or trawl computers for personal information, Elk Cloner merely typed out a few lines of poetry.

Copyright 2007 MGN LTD
Provided by ProQuest Information and Learning Company. All rights Reserved.

Information provided by: Findarticles.com

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ABSTRACT

Many enveloped viruses employ low-pH-triggered membrane fusion during cell penetration. Solution-based in vitro assays in which viruses fuse with liposomes have provided much of our current biochemical understanding of low-pH-triggered viral membrane fusion. Here, we extend this in vitro approach by introducing a fluorescence assay using single particle tracking to observe lipid mixing between individual virus particles (influenza or Sindbis) and supported lipid bilayers. Our single-particle experiments reproduce many of the observations of the solution assays. The single-particle approach naturally separates the processes of membrane binding and membrane fusion and therefore allows measurement of details that are not available in the bulk assays. We find that the dynamics of lipid mixing during individual Sindbis fusion events is faster than 30 ms. Although neither virus binds membranes at neutral pH, under acidic conditions, the delay between membrane binding and lipid mixing is less than half a second for nearly all virus-membrane combinations. The delay between binding and lipid mixing lengthened only for Sindbis virus at the lowest pH in a cholesterol-dependent manner, highlighting the complex interaction between lipids, virus proteins, and buffer conditions in membrane fusion.

INTRODUCTION

The boundaries of all living cells and their compartments are detined by lipitl hilayers. Intracellular lransport, cell entry, and secretion require vesicular lipid structures to fuse with target membranes. Membrane fusion proteins are involved in catalyzing almost every situation of biological membrane fusion. Despite decades of intense study, the precise molecular mechanism by which fusion proteins mediate membrane fusion remains a subject of much debate (1-11).

Among the best-studied membrane fusion protein machines arc those present in enveloped viruses. Enveloped viruses have evolved highly efficient fusion proteins that allow the viral genome to penetrate targeted cells (12-18). For most enveloped viruses, environmental signals trigger these proteins to catalyze fusion of the viral membrane with the cell membrane. The decreased pH encountered along the endocytotie pathway is a common trigger for the fusion proteins of many enveloped viruses, most notably influenza (19,20). In a few cases, atomic resolution structures are available for viral fusion proteins under both neutral pH and low pH conditions (12) that have led to formulation of models of their molecular action (12,13).

Many enveloped viruses will fuse to protein free lipid hilayers (20-22). In vitro liposome fusion experiments have been extremely useful in characterizing the biochemical properties of viral fusion, including the pH and lipid species dependences (23,24). Bulk liposome measurements have also confirmed that viral fusion is often nun leaky and can fully mix both the tipids and the contents of fusing structures (25,26).

As valuable as these bulk assays have been in advancing our understanding of membrane fusion, they have limitations. Low-pH triggered viral membrane fusion occurs rapidly after acidification, with timescales measured in lens of seconds or minutes in the bulk liposome experiments(16,21). The stochastic nature of each occurrence of fusion prevents the precise synchronization of all of the individual virus-liposome fusion events within a cuvette-based bulk solution assay. These experimental challenges mask transient, intermediate stales along the fusion pathway and obscure detailed analysis of the trajectory of the nonequilibrium processes driving the dynamics. Difficulty separating the linked processes of binding and fusion in bulk assays also complicates the interpretation of experimental results.

We have developed a fluorescence assay to make detailed measurements of the early stages of individual Sindhis and influenza virus particles fusing to supported lipid bilayers under acidic conditions. Our assay detects lipid mixing of ocladecyl rhodumine (R18) between virus particles and the supported lipid bilayer. As R18 is known to “flip-flop” between the inner and outer leaflets of a labeled bilayer (27,28), this signal does not differentiate between hemifusion and full fusion. Throughout this article we will use hemifusion/fusion to indicate this ambiguity.

The supported lipid bilayer geometry is desirable for its compatibility with high-resolution optical measurements as well as its ease of integration with biotechnological instrumentation and sensors. Supported bilayers have been successfully applied in membrane fusion studies of SNARE proteins (29-31) and influenza virus (32-36). Illumination of the supported lipid bilayer by total internal refection yields a signal/noise ratio sufficient for precise measurements of individual virus particles during fusion. Continued development of this single-particle approach will allow detection of the transient, stochastic intermediate states that arc commonly averaged in liposome fusion assays.

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ABSTRACT

Self-assembled DNA delivery systems based on cationic lipids are simple to produce and weakly hazardous in comparison with viral vectors, but possess a significant toxicity at high doses. Phospholipids are in contrast intrinsically safe; yet their association with DNA is problematic because of unfavorable electrostatic interactions. We achieve the phospholipid-DNA complexation through the like-charge attraction induced by cations. Monovalent cations are inappropriate due to their poor binding affinity with lipids as inferred from electrophoretic mobility, whereas x-ray diffractions reveal that with multivalent cations, DNA is complexed within an inverted hexagonal liquid-crystalline phase. Coarse-grained Monte Carlo simulations confirm the self-assembly of a DNA rod wrapped into a lipid layer with cations in between acting as molecular glue. Transfection experiments performed with Ca^sup 2+^ and La^sup 3+^ demonstrate efficiencies surpassing those obtained with optimized cationic DOTAP-based systems, while preserving the viability of cells. Inspired by bacteriophages that resort to polycations to compact their genetic materials, complexes assembled with tetravalent spermine achieve unprecedented transfection efficiencies for phospholipids. Influence of complex growth time, lipid/DNA mass ratio, and ion concentration are examined. These complexes may initiate new developments for nontoxic gene delivery and fundamental studies of biological self-assembly.

INTRODUCTION

Gene therapy suffers from a lack of efficient and nontoxic delivery systems (1). DNA is traditionally delivered by either viral or nonviral vector-mediated systems (2). Viral methods are by far the most efficient in ternis of delivery’ and expression, owing to the highly evolved and specialized com ponents of natural viruses (3,4). They present, however, a number of restrictions due to the induced toxicity and immunogenicily, the limited size of DNA that can be carried, the lack of specificity, and the high cost of production (5). Considerably easier to prepare and saler to use, artificial viruses are made of self-assembling complexes of DNA with positively charged molecules such us lipids. polymers, peplides, or combinations thereof; yet two major difficulties have limited their success so far in clinical applications (5-8): i), low transfeclion efficiencies (TB) in comparison with (hat of their viral counterpart, and ii). problems of carrier toxicity. elimination, and biodegradability, especially occurring at high injected doses when increasing the total amount of delivered DNA.

A particular emphasis has been given to lipids because they are the main constituents of cell and organelle membranes for all living organisms; accordingly, numerous cationic lipids have been synthesized to date for the delivery of nucleic acids into cultured cells (9-11). as well as in clinical trials (12-14). Despite a few successful and promising attempts in vivo, the toxicily arising from these synthetic materials has been hampering their use in the pharmaceutical industry. Strong administered doses and high lipid charges are generally more toxic to a variety of cell types including cancer cell lines. Cell shrinking, inflammatory reactions, and immunoioxicity are among the many harmful effects associated with cationic lipids (15).

Unlike positively charged lipids thai are only found in eMremely small amounts in certain tissues (16), phospholipids, either anionic or zwitterionic, are ubiquitous in cell membranes and may thereby consiitute bet 1er candidates for lipkl-based deliver) systems. The challenge is to achieve the complcxation between nucleic acids and phospholipids, given their low affinity arising from unfavorable electrostatic interactions. Several x-ray diffraction studies have revealed ordered phases in which DNA was complexcd within liquidcrystalline structures of phospholipids through the mediation of divalent cations (17-20). Interestingly, the geometry of these complexes was identical to thai observed with cut ionic lipids, that is. lamellar and inverted hexagonal structures (21 ). These findings support the capability of phospholipids to compact nucleic acids under certain conditions. Very recently, phosphalidylcholine lipids could transfer plasmid DNA inlo mouse librohlasts in the presence of bivalent metal cations. Unfortunately, the transfcction efficiency achieved was loo low for practical applications (22).

In mis work, we report highly efficient phospholipid-DNA complexes assembled by using multivalcnt cations including !rivaient and telravaleni calions. We also attempt to shed light on the mechanisms underlying the self-assembly process, as well as to identify the key paramelers necessary to achieve high delivery performances. We first investigate the binding properties of mullivalent cations wiih phospholipid membranes and correlate them with the complexalion of DNA. X-ray diffractions and Monte Carlo simulations enable us to get some insight into the assembly of complexes at a molecular level. We next monitor lhe transfection efficiencies ol’ complexes imule of various phospholipids and mullivalent calions, and compare llicm Io a cationic mixture of lipids. The cylotoxicity on cultured cells is also assessed. Then, we seek lhe factors affecting lhe formation of complexes, and analyze their influence on the transfcction performances. We finish with a summary on the supratnolecular siruclure of complexes, the key parameters for gene delivery, and on further possible improvements.

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